The database contains sequence data translated from the nucleotide sequences of the DDBJ/EMBL/GenBank database as well as sequences from Swiss-Prot , the Protein Information Resource (PIR) , RefSeq and the Protein Data Bank (PDB) . In the field of bioinformatics, a sequence database is a type of biological database that is composed of a large collection of computerized nucleic acid sequences, protein sequences, or other polymer sequences stored on a computer. UniProt data.

UniProtKB/Swiss-Prot • protein sequence database • UniProtKB/Swiss-Prot • UniProtKB/Swiss-Prot is the manually annotated component of UniProtKB (produced by the UniProt consortium). The program compares nucleotide or protein sequences to sequence databases and calculates the statistical significance of matches.

Download latest release Get the UniProt data Protein databases are compiled by the translation of DNA sequences from different gene databases and include structural information. BLAST can be used to infer functional and evolutionary relationships between sequences as well as help identify members of gene families. The Universal Protein Resource (UniProt) provides the scientific community with a single, centralized, authoritative resource for protein sequences and functional information. Protein sequences are the fundamental determinants of biological structure and function. As of 2013 it contained over 40 million sequences and is growing at an exponential rate. The Protein database is a collection of sequences from several sources, including translations from annotated coding regions in GenBank, RefSeq and TPA, as well as records from SwissProt, PIR, PRF, and PDB.

A protein database is one or more datasets about proteins, which could include a protein’s amino acid sequence, conformation, structure, and features such as active sites. The Pfam database web site provides search interface for querying by sequence, keyword, domain architecture, taxonomy, and browse interfaces for analyzing protein sequences for Pfam matches and viewing Pfam annotations in domain architectures, sequence alignments, interactions, species and protein structures in PDB . Sequence alignments Align two or more protein sequences using the Clustal Omega program. Protein database can be a sequence database orstructure database.Protein sequence database:The protein sequence database was developed atNational biomedical research foundation (NBRF) atGeorgetown university by margaret dayoff in 1960’s.The protein sequence database was collaborativelymaintained by …

It contains manually-annotated (reviewed) records with information extracted from the literature and curator-evaluated computational analysis.

Retrieve/ID mapping Batch search with UniProt IDs or convert them to another type of database ID (or vice versa) Peptide search Find sequences that exactly match a query peptide sequence. PROTEINDATABASESM.SARUBALA 2. Protein databases 1. The UniProt database is an example of a protein sequence database.

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